Hey Brooks.. I don't know a lot about the places down south/downtown, but up north you've got:
1. Fumee -
http://fumeecigars.com/ - Not really a great selection of cigars IMO, but it's a decent lounge, bartenders are friendly. Beer, wine, and coffee (I think tea too) only though. No hard liquor.
2. Cigar Room (Out on 620 in Lakeway) - Owner is a member here, been here once and met him (Alex Torres) and Mark (SailorAg) there. Good people. Decent selection there. Alex has his own brand there as well. Some couches, tables, chairs. Decent beer selection. I hear the wine selection is good, but I rarely drink wine so I didn't look. I forget it they carry hard liquor or not.
3. Heroes and Legacies - This one is up north as well in Austin. The lounge here is nice and big. Couple of big screens. Friendly and fairly knowledgeable staff. Unfortunate part is the lounge is member's only. I think you can buy a day pass for like $10, or buy their cigar of the week and get in for free that day. I've only been on event days when the lounge is openand a day they had an open lounge. Nice place though. BYOB. (This is my local B&M that I buy from when looking for some random singles of stuff to try). They do have an outdoor smoking area which you can smoke out without going in the lounge.
4. Habana House (Downtown) -
http://www.showmeyourash.com/ - I checked this place out for their Tat selection because heroes was lacking. Good tat selection, IIRC they had a good Illusione selection. Small smoking area, but it's located in a coffee house that serves alcohol (full bar I think). Guy running the shop when I was in was very friendly. Guys in there seemed great as well.
I know there are a few others, but those are the ones I've actually been to.