I've been in the same spot... its a matter of being open about it and meeting her half way... don't smoke all the time, don't be a jerk about it, don't let it consume you.... treat it like a hobby and treat her like your wife.
I guess I am lucky. My wife is way cool with me smoking cigars as long as it is in moderation. She also likes smoking cigars and has her own humidor and stash. She supports my work in the cigar industry and is great about everything. She is letting me get a large 2000 count humidor cabinet next year for our anniversary.
I know many guys who aren't as lucky. I just count my blessings and enjoy sharing cigars with my wife...... well as long as she stays out of my good stuff.
Somewhere on here is a thread with a pi of me smoking in the house. I went thru almost the same crap... then one day I could smoke in the house. That has changed again... I can only smoke inside if it is winter and COLD outside. not saying yours is going that direction but it should somewhat and ye in a few months this should all blow over.